Sequence aligner (smith_waterman)
=================================

Documentation
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.. doxygenfile:: smith_waterman.hpp

Usage examples
--------------

examples/smith_waterman/1_random_global_alignment
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.. literalinclude:: ../../examples/smith_waterman/1_random_global_alignment/random_global_alignment.cpp
   :encoding: latin-1
   :language: cpp
   :tab-width: 4

examples/smith_waterman/2_all_to_all_alignment
##############################################

.. literalinclude:: ../../examples/smith_waterman/2_all_to_all_alignment/all_to_all_alignment.cpp
   :encoding: latin-1
   :language: cpp
   :tab-width: 4